PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0221800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1162aa    MW: 128522 Da    PI: 6.5114
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0221800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.61e-22153254199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   
  ORGLA06G0221800.1 153 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV-- 240
                        99*****************************954.4444.49************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++++l+++++r+
  ORGLA06G0221800.1 241 RDEKQQLLLGIRRA 254
                        5688889****997 PP

2Auxin_resp117.98.1e-39279362183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  ORGLA06G0221800.1 279 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 362
                        79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-43142282IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-41145268IPR015300DNA-binding pseudobarrel domain
CDDcd100174.69E-19152244No hitNo description
PfamPF023621.2E-20153254IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801153255IPR003340B3 DNA binding domain
SMARTSM010191.6E-22153255IPR003340B3 DNA binding domain
PfamPF065071.5E-33279362IPR010525Auxin response factor
PfamPF023091.8E-910261113IPR033389AUX/IAA domain
PROSITE profilePS5174526.93810281112IPR000270PB1 domain
SuperFamilySSF542774.51E-710401107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1162 aa     Download sequence    Send to blast
MMKQAQQVPP PPASSAVTTT TAMAAATAAA VVGSGCEGEK TKAPAINSEL WHACAGPLVS  60
LPPAGSLVVY FPQGHSEQVA ASMQKDVDAH VPSYPNLPSK LICLLHNVTL HADPETDEVY  120
AQMTLQPVTS YGKEALQLSE LALKQARPQT EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP  180
PLDFSMQPPA QELQARDLHD NVWTFRHIYR GQPKRHLLTT GWSLFVSGKR LFAGDSVIFV  240
RDEKQQLLLG IRRANRQPTN ISSSVLSSDS MHIGILAAAA HAAANNSPFT IFYNPRASPT  300
EFVIPFAKYQ KAVYGNQISL GMRFRMMFET EELGTRRYMG TITGISDLDP VRWKNSQWRN  360
LQVGWDESAA GERRNRVSIW EIEPVAAPFF ICPPPFFGAK RPRQLDDESS EMENLLKRAM  420
PWLGEEICIK DPQTQNTIMP GLSLVQWMNM NMQQSSSFAN TAMQSEYLRS LSNPNMQNLG  480
AADLSRQLCL QNQLLQQNNI QFNTPKLSQQ MQPVNELAKA GIPLNQLAVS TKPQEQIHDA  540
SNLQRQQPSM NHMLPLSQAQ TSLGQAQVLV QNQMQQQHAS STQGQQPATS QPLLMPQQQQ  600
QQQHQEQQQQ QQQQQQQQQK LLQQQQQQLL LQQQQQLSKM PAQLSNLANQ QFQLTDQQLQ  660
LQLLQKLQQQ QQSLLSQPAV TLAQLPLIQE QQKLLLDMQQ QLSNSQTLSQ QQMMPQQSTK  720
VPSQNTPLPP VQQEPQQKLL QKQAMLADTS EAAVPPTTSV NVISTTGSPL MTTGATHSVL  780
TEEIPSCSTS PSTANGNHLL QPILGRNKHC SMINTEKVPQ SAAPMSVPSS LEAVTAIPRM  840
IKDSPKLNHN VKQSVVASKL ANAGTGSQNY VNNPPPTDYL ETASSATSVW LSQNDGLLHQ  900
NFPMSNFNQP QMFKDAPPDA EIHAANTSNN ALFGINGDGP LGFPIGLGTD DFLSNGIDAA  960
KYENHISTEI DNSYRIPKDA QQEISSSMVS QSFGASDMAF NSIDSTINDG GFLNRSSWPP  1020
AAPLKRMRTF TKVYKRGAVG RSIDMSQFSG YDELKHALAR MFSIEGQLEE RQRIGWKLVY  1080
KDHEDDILLL GDDPWEEFVG CVKCIRILSP QEVQQMSLEG CDLGNNIPPN QACSSSDGGN  1140
AWRARCDQNS GNPSNGSYEQ FE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1714138346388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712960.0AB071296.1 Oryza sativa OsARF7a mRNA for auxin response factor 7a, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643493.10.0PREDICTED: auxin response factor 19
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLI1Q5050.0I1Q505_ORYGL; Auxin response factor
STRINGORGLA06G0221800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19